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KMID : 0364820200560010101
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Korean Journal of Microbiology
2020 Volume.56 No. 1 p.101 ~ p.102
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Complete genome sequence of Novosphingobium ginsenosidimutans FW-6 T , a ginsenoside-converting bacterium, isolated from fresh water
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Liu Qing Mei
Lee Byoung-Hee
Lee Ki-Eun
Kim Sang-Yong
Wee Ji-Hyang
Im Wan-Taek
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Abstract
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According to the previous study, a Gram-stain-negative, rodshaped, non-spore-forming, non-motile bacterium, Novosphingobium ginsenosidimutans FW-6 T was isolated from fresh water.
Strain FW-6 T possessed β-glucosidase activity, which was responsible for its ability to convert ginsenoside Rb1 to ginsenoside Rd. In this study the whole genome of Novosphingobium ginsenosidimutans FW-6 T was sequenced, which consisted of one circular chromosome of 3,118,872 bp, with a DNA G + C content of 64.3%. Of the 3,073 predicted genes, 2,996 proteincoding genes, 50 RNA genes and 27 pseudogenes were identified.
The whole genome analysis of strain FW-6 T showed several genes including glycoside hydrolase, antitoxin genes, and DNA repair genes.
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KEYWORD
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Novosphingobium ginsenosidimutans, complete genome, fresh water, glycoside hydrolase, PacBio RS II
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